Ya it looks like the input shaft was the weak link. There is no teeth left on it. And it broke under power. Right when I was about to push the clutch in at about 7000rpm. I think this was a factory defect, or just weakened over time. The transmission is in PERFECT shape though! The thing shifts now that the debris was taken out. There are no missing roll pins, no missing snap rings etc. So far, there is nothing in the shrapnel but gear.
The input shaft piece of 2nd gear is actually part of the shaft itself. You cannot replace it, the shaft is trash. This is the part that caused the failure imho. The gear is cast, and possibly had a small defect from the factory.
The '00-'01 QG tranny is the same, but has a 3.827 final drive. I am going to try that if I can find one. Otherwise, it looks like the later models all used the 4.176 final drive, which is the same as what I've got now.
Gears look like they cost about $100-$110 each new from Nissan, but the input shaft is still very expensive.
The good news is the QG tranny can be had for about $120 here locally for a 2004. And the rest of the transmission looks like it is in perfect shape! No other damage from the gear exploding! All the other gears look great, in perfect shape. And the only synchro showing ANY wear at all is 2nd, and it is extremely minor!